If you are dreaming of a cozy treat that captures the essence of fall and melts in your mouth with every bite, this Pumpkin Cream Cheese Muffins Recipe is exactly what you need. Imagine moist, spiced pumpkin muffins with a luscious, tangy cream cheese swirl that creates a perfect balance of flavors and textures. These muffins are wonderfully fragrant, deeply comforting, and just the sort of homemade delight that turns an ordinary morning into something truly special. Whether you’re baking for a weekend brunch or a sweet snack, this Pumpkin Cream Cheese Muffins Recipe will quickly become your go-to for seasonal indulgence.

Ingredients You’ll Need
Gathering simple and pantry-friendly ingredients is the key to making these irresistible Pumpkin Cream Cheese Muffins Recipe come to life. Each component plays a distinct role, from warming spices to creamy filling, creating that delightful blend of taste, texture, and rich autumnal color.
- 1 3/4 cups all-purpose flour: The foundation that gives structure and a tender crumb to the muffins.
- 1 cup granulated sugar: Adds sweetness and helps with browning for that inviting golden top.
- 1/2 cup packed brown sugar: Brings a deep, molasses-like flavor and enhances moisture.
- 1 teaspoon baking soda: Acts as a leavening agent to give your muffins a light, airy rise.
- 1/2 teaspoon salt: Balances sweetness and heightens the spices’ aroma.
- 2 teaspoons ground cinnamon: Warm and fragrant, cinnamon is essential for a classic pumpkin spice note.
- 1/2 teaspoon ground nutmeg: Adds a subtle nutty depth to the spice mix.
- 1/4 teaspoon ground cloves: A pinch of bold spice to round out the flavor palette.
- 1/4 teaspoon ground ginger: Offers a gentle zing that complements pumpkin perfectly.
- 1 cup pumpkin puree: The star ingredient, providing moistness and that vibrant orange hue.
- 2 large eggs: Bind everything together while enriching the texture.
- 1/2 cup vegetable oil: Keeps the muffins tender and adds moistness without overpowering flavor.
- 1 tablespoon vanilla extract: Enhances sweetness and layers on a rich aromatic note.
- 1/4 cup milk: Helps create a smooth batter and a softer crumb.
- 6 ounces cream cheese, softened: For the irresistible filling that adds tangy creaminess.
- 1/4 cup granulated sugar for filling: Sweetens the cream cheese without making it heavy.
- 2 tablespoons all-purpose flour for filling: Stabilizes the cream cheese mixture for a perfect swirl.
How to Make Pumpkin Cream Cheese Muffins Recipe
Step 1: Prep Your Oven and Muffin Tin
Start by preheating your oven to 350°F (175°C) and line a 12-cup muffin tin with paper liners. This step is all about prep and ensures your muffins bake evenly and slide right out of the pan when done.
Step 2: Combine Dry Ingredients
In a large bowl, mix together the flour, granulated sugar, brown sugar, baking soda, salt, and all the warm spices: cinnamon, nutmeg, cloves, and ginger. This aromatic blend creates the signature pumpkin muffin flavor.
Step 3: Whisk Together Wet Ingredients
In a separate medium bowl, whisk the pumpkin puree, eggs, vegetable oil, vanilla extract, and milk until everything is smooth and well combined. This mixture adds moisture and richness to the muffins.
Step 4: Blend Wet and Dry Mixtures
Gradually add the wet ingredients to the dry, stirring just until combined. It’s important not to overmix here to keep the muffins tender and not tough.
Step 5: Prepare the Cream Cheese Filling
Beat the softened cream cheese with 1/4 cup sugar and 2 tablespoons flour until smooth and creamy. This filling will be the luscious surprise inside your pumpkin muffins.
Step 6: Fill Muffin Cups with Pumpkin Batter
Divide the pumpkin batter evenly among the muffin liners, filling each about two-thirds full so there’s room for rising and the cream cheese swirl.
Step 7: Add Cream Cheese Filling
Place a spoonful of the cream cheese mixture right in the center of each muffin cup, on top of the pumpkin batter.
Step 8: Create the Swirl
Gently swirl the cream cheese into the batter using a toothpick or skewer to create that beautiful marbled effect that’s a signature of this Pumpkin Cream Cheese Muffins Recipe.
Step 9: Bake Your Muffins
Bake in the preheated oven for 18-22 minutes, or until a toothpick inserted into the muffins (not the cream cheese center) comes out clean. The result is golden, risen muffins with a creamy, luscious filling.
Step 10: Cool and Enjoy
Let the muffins cool in the pan for about five minutes before transferring them to a wire rack to cool completely. This step helps set the cream cheese swirl beautifully.
How to Serve Pumpkin Cream Cheese Muffins Recipe

Garnishes
These muffins are delightful on their own, but a light dusting of powdered sugar or a sprinkle of chopped toasted pecans on top adds a lovely finishing touch for added texture and visual appeal.
Side Dishes
Pair your Pumpkin Cream Cheese Muffins Recipe with a hot cup of chai tea, coffee, or a spiced latte for breakfast or brunch. Fresh fruit like sliced apples or pears also complements the warm spices wonderfully.
Creative Ways to Present
Try serving these muffins warm with a pat of butter melting over the top or spread with a smear of honey or fig jam for a touch of sweet contrast. You can also cut them in half and make mini pumpkin cream cheese muffin sandwiches with a dollop of whipped cream or mascarpone.
Make Ahead and Storage
Storing Leftovers
Store any leftover Pumpkin Cream Cheese Muffins in an airtight container at room temperature for up to two days. For longer freshness, refrigerate them to keep the cream cheese filling from spoiling.
Freezing
You can freeze the muffins individually wrapped in plastic wrap, then placed in a freezer bag for up to three months. Thaw them overnight in the fridge or at room temperature before serving.
Reheating
Reheat your muffins in a microwave for about 20 seconds or in a 350°F oven for 5-7 minutes to regain that fresh-baked warmth and gooey cream cheese center.
FAQs
Can I use canned pumpkin or fresh pumpkin puree for this recipe?
Absolutely, canned pumpkin puree works perfectly since it’s fully cooked and has the right consistency. If you use fresh pumpkin, be sure to cook and puree it until smooth and slightly thickened before using.
Is it possible to make these muffins dairy-free?
Yes, you can substitute the cream cheese with a dairy-free cream cheese alternative and use a plant-based milk to make these muffins suitable for dairy-free diets.
How do I prevent the cream cheese from sinking to the bottom?
By spooning the cream cheese mixture on top of the batter and gently swirling, you create a marbled effect without it sinking, helping it stay perfectly distributed.
Can I add nuts or chocolate chips to the batter?
Definitely! Chopped walnuts, pecans, or mini chocolate chips can be folded into the batter for extra texture and flavor. Just add about 1/2 cup before filling the muffin cups.
What is the best way to tell when these muffins are done baking?
Insert a toothpick into the muffin’s pumpkin batter part (avoiding the cream cheese center). If it comes out clean or with a few moist crumbs, the muffins are ready to come out of the oven.
Final Thoughts
Once you try this Pumpkin Cream Cheese Muffins Recipe, you’ll see why it’s a beloved fall classic that brings warmth and joy to any kitchen. From the tender pumpkin spice base to the tangy cream cheese swirl, every bite is pure comfort wrapped in a muffin. So go ahead, gather your ingredients, and treat yourself and your loved ones to this cozy homemade delight—you won’t regret it!
Print
Pumpkin Cream Cheese Muffins Recipe
- Prep Time: 0h 20m
- Cook Time: 0h 22m
- Total Time: 0h 42m
- Yield: 12 muffins
- Category: Baking
- Method: Baking
- Cuisine: American
Description
These Pumpkin Cream Cheese Muffins combine the rich flavors of spiced pumpkin with a creamy, sweetened cream cheese swirl, creating a moist and flavorful treat perfect for fall or any time you crave a delightful muffin with a luscious filling.
Ingredients
Dry Ingredients
- 1 3/4 cups all-purpose flour
- 1 cup granulated sugar
- 1/2 cup packed brown sugar
- 1 teaspoon baking soda
- 1/2 teaspoon salt
- 2 teaspoons ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/4 teaspoon ground cloves
- 1/4 teaspoon ground ginger
Wet Ingredients
- 1 cup pumpkin puree
- 2 large eggs
- 1/2 cup vegetable oil
- 1 tablespoon vanilla extract
- 1/4 cup milk
Cream Cheese Filling
- 6 ounces cream cheese, softened
- 1/4 cup granulated sugar
- 2 tablespoons all-purpose flour
Instructions
- Preheat Oven and Prepare Muffin Tin: Preheat your oven to 350°F (175°C) and line a 12-cup muffin tin with paper liners to prevent sticking and for easy removal.
- Mix Dry Ingredients: In a large bowl, thoroughly mix together the all-purpose flour, granulated sugar, brown sugar, baking soda, salt, cinnamon, nutmeg, cloves, and ginger until well combined.
- Combine Wet Ingredients: In a separate medium bowl, whisk together the pumpkin puree, eggs, vegetable oil, vanilla extract, and milk until the mixture is smooth and homogenous.
- Combine Wet and Dry Mixtures: Gradually add the wet mixture to the dry ingredients, stirring gently until just combined. Avoid overmixing to keep the muffins tender and light.
- Prepare Cream Cheese Filling: In a small bowl, beat the softened cream cheese with 1/4 cup granulated sugar and 2 tablespoons of flour until the mixture becomes smooth and creamy, suitable for swirling into the batter.
- Fill Muffin Cups: Spoon the pumpkin batter evenly into the prepared muffin cups, filling each about two-thirds full to allow room for rising.
- Add Cream Cheese Swirl: Add a spoonful of the cream cheese mixture directly onto the center of each muffin cup filled with batter.
- Swirl Filling: Using a toothpick or skewer, gently swirl the cream cheese mixture into the pumpkin batter to create a marbled effect without mixing it completely.
- Bake Muffins: Place the muffin tin in the preheated oven and bake for 18-22 minutes or until a toothpick inserted in the center of a muffin comes out clean, indicating they are fully cooked.
- Cool Muffins: Let the muffins cool in the pan for 5 minutes to firm up, then transfer them to a wire rack to cool completely before serving or storing.
Notes
- Do not overmix the batter to keep the muffins moist and tender.
- Make sure the cream cheese is softened for easier mixing and a smoother filling.
- You can store the muffins in an airtight container at room temperature for up to 3 days or refrigerate for up to a week.
- These muffins freeze well; wrap individually in plastic wrap and freeze up to 3 months.
- For a dairy-free or vegan alternative, substitute the cream cheese and eggs with appropriate plant-based options.

